![]() GenGIS requires you to load in a map file, which is less easy. Maps: Microreact uses Leaflet.js to connect to OpenStreetMap maps, which is easy. I compiled a tree, information about locations, and specific isolates into a set of files that we will use in the examples below. ![]() Since the Haiti sequences constituted a clade that was embedded within a larger Nepalese clade, the authors concluded that Nepalese peacekeepers were the most likely source of the epidemic strain: this corroborated with the geographic proximity of peacekeeping camps with affected areas. (2014), which used phylogenetic methods to identify the most probably source for the introduction of Vibrio cholerae into Haiti. The dataset we will be using is adapted from Eppinger et al. Export a Microreact project and create visualizations in GenGIS.Create a Microreact project and use it for outbreak investigation.Build a simple tree visualization using Phylocanvas.Infectious Disease Genomic Epidemiology Phylogeography Lab Phylogeography CBW tutorial Rob Beiko - May 1, 2017īy the end of the tutorial, you will be able to:
0 Comments
Leave a Reply. |